Clonestimate

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GenClone 2.0

GenClone: a computer program to analyze genotypic data, test for clonality and describe spatial clonal organization.

Arnaud-Haond Sophie and Belkhir Khalid
«Team MAREE» - CCMAR, Algarve University, FCMA, Gambelas, 8005-139 Faro, PORTUGAL
«Génome, Populations, Interactions »-Université Montpellier II, Place Eugène Bataillon ; 34090 Montpellier Cedex, FRANCE

RClone

RClone is the R version of GenClone, plus the possibility to work with several populations, MultiLocus Lineages custom definition and use, and p-value calculation for psex (probability of originating from distinct sexual events) and psex_Fis (taking account of Hardy-Weinberg equilibrium departure) as MLGsim.

EDENetworks

EDENetworks is an easy to use tool for analysing genetic networks. It allows researchers to use the tools from complex networks science to analyse genetic data using a user friendly graphical interface. You can study both individual level or population level networks by giving either a genetic marker file or a distance matrix as an input.

SimulatorClonix

Simulateur de populations partiellement clonales sous python: Simulateur de populations à taux de clonalté c variables, dans lequel peuvent être également modulés les taux de mutation, taille de populations et temps de génération